Brooke Fridley: search on Z-Library

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1

Comparison of penalty functions for sparse canonical correlation analysis

Prabhakar Chalise, Brooke L. Fridley

Journal:

Computational Statistics & Data Analysis

Year:

2012

Language:

english

File:

PDF, 1.08 MB

english, 2012

2

Statistical genomics in rare cancer

Abbas-Aghababazadeh, Farnoosh, Mo, Qianxing, Fridley, Brooke L.

Journal:

Seminars in Cancer Biology

Year:

2019

Language:

english

File:

PDF, 2.52 MB

english, 2019

3

Network-based integrative clustering of multiple types of genomic data using non-negative matrix factorization

Chalise, Prabhakar, Ni, Yonghui, Fridley, Brooke L.

Journal:

Computers in Biology and Medicine

Year:

2020

Language:

english

File:

PDF, 1.79 MB

english, 2020

4

Data augmentation for a Bayesian spatial model involving censored observations

Brooke L. Fridley, Philip Dixon

Journal:

Year:

2007

Language:

english

File:

PDF, 343 KB

english, 2007

5

Diagnostic tools in linkage analysis for quantitative traits

Mariza de Andrade, Brooke Fridley, Eric Boerwinkle, Stephen Turner

Journal:

Genetic Epidemiology

Year:

2003

Language:

english

File:

PDF, 226 KB

english, 2003

6

Missing phenotype data imputation in pedigree data analysis

Brooke L. Fridley, Mariza de Andrade

Journal:

Genetic Epidemiology

Year:

2008

Language:

english

File:

PDF, 164 KB

english, 2008

7

Bayesian variable and model selection methods for genetic association studies

Brooke L. Fridley

Journal:

Genetic Epidemiology

Year:

2009

Language:

english

File:

PDF, 274 KB

english, 2009

8

Bayesian mixture models for the incorporation of prior knowledge to inform genetic association studies

Brooke L. Fridley, Daniel Serie, Gregory Jenkins, Kristin White, William Bamlet, John D. Potter, Ellen L. Goode

Journal:

Genetic Epidemiology

Year:

2010

Language:

english

File:

PDF, 476 KB

english, 2010

9

Interacting alleles of the coinhibitory immunoreceptor genes cytotoxic T-lymphocyte antigen 4 and programmed cell-death 1 influence risk and features of primary biliary cirrhosis

Brian D. Juran, Elizabeth J. Atkinson, Erik M. Schlicht, Brooke L. Fridley, Gloria M. Petersen, Konstantinos N. Lazaridis

Journal:

Year:

2008

Language:

english

File:

PDF, 125 KB

english, 2008

10

Xenobiotic-Metabolizing gene polymorphisms and ovarian cancer risk

Ellen L. Goode, Kristin L. White, Robert A. Vierkant, Catherine M. Phelan, Julie M. Cunningham, Joellen M. Schildkraut, Andrew Berchuck, Melissa C. Larson, Brooke L. Fridley, Janet E. Olson, Penelope

Journal:

Molecular Carcinogenesis

Year:

2011

Language:

english

File:

PDF, 80 KB

english, 2011

11

Reproducibility of genotypes as measured by the affymetrix GeneChip® 100K Human Mapping Array set

Brooke L. Fridley, Stephen T. Turner, Arlene B. Chapman, Andrei S. Rodin, Eric Boerwinkle, Kent R. Bailey

Journal:

Computational Statistics & Data Analysis

Year:

2008

Language:

english

File:

PDF, 630 KB

english, 2008

12

Imputation methods for missing data for polygenic models

Brooke Fridley, Kari Rabe, Mariza de Andrade

Journal:

Year:

2003

Language:

english

File:

PDF, 460 KB

english, 2003

13

A Bayesian hierarchical nonlinear model for assessing the association between genetic variation and drug cytotoxicity

Brooke L. Fridley, Gregory Jenkins, Daniel J. Schaid, Liewei Wang

Journal:

Statistics in Medicine

Year:

2009

Language:

english

File:

PDF, 215 KB

english, 2009

14

Serine hydroxymethyltransferase 1 and 2: gene sequence variation and functional genomic characterization

Scott J. Hebbring, Yubo Chai, Yuan Ji, Ryan P. Abo, Gregory D. Jenkins, Brooke Fridley, Jianping Zhang, Bruce W. Eckloff, Eric D. Wieben, Richard M. Weinshilboum

Journal:

Journal of Neurochemistry

Year:

2012

Language:

english

File:

PDF, 427 KB

english, 2012

15

Gene set analysis of SNP data: benefits, challenges, and future directions

Fridley, Brooke L, Patch, Christine

Journal:

European Journal of Human Genetics

Year:

2011

Language:

english

File:

PDF, 398 KB

english, 2011

16

A Bayesian Integrative Genomic Model for Pathway Analysis of Complex Traits

Brooke L. Fridley, Steven Lund, Gregory D. Jenkins, Liewei Wang

Journal:

Genetic Epidemiology

Year:

2012

Language:

english

File:

PDF, 600 KB

english, 2012

17

FKBP51 Affects Cancer Cell Response to Chemotherapy by Negatively Regulating Akt

Huadong Pei, Liang Li, Brooke L. Fridley, Gregory D. Jenkins, Krishna R. Kalari, Wilma Lingle, Gloria Petersen, Zhenkun Lou, Liewei Wang

Journal:

Year:

2009

Language:

english

File:

PDF, 1.19 MB

english, 2009

18

Polymorphisms in TCEAL7 and risk of epithelial ovarian cancer

Abraham Peedicayil, Robert A. Vierkant, Vijayalakshmi Shridhar, Joellen M. Schildkraut, Sebastian Armasu, Lynn C. Hartmann, Brooke L. Fridley, Julie M. Cunningham, Catherine M. Phelan, Thomas A. Selle

Journal:

Gynecologic Oncology

Year:

2009

Language:

english

File:

PDF, 182 KB

english, 2009

19

Polymorphisms in NF-κB Inhibitors and Risk of Epithelial Ovarian Cancer

Kristin L White, Robert A Vierkant, Catherine M Phelan, Brooke L Fridley, Stephanie Anderson, Keith L Knutson, Joellen M Schildkraut, Julie M Cunningham, Linda E Kelemen, V Shane Pankratz, David N Rid

Journal:

Year:

2009

Language:

english

File:

PDF, 257 KB

english, 2009

20

No association between a candidateTCF7L2variant and risk of breast or ovarian cancer

Ellen L Goode, Csilla Szabo, Ludmila Prokunina-Olsson, Robert A Vierkant, Zachary S Fredericksen, Francis S Collins, Kristin L White, Michele Schmidt, Brooke L Fridley, Fergus J Couch

Journal:

Year:

2009

Language:

english

File:

PDF, 181 KB

english, 2009

21

Distinct germ line polymorphisms underlie glioma morphologic heterogeneity

Robert B. Jenkins, Margaret R. Wrensch, Derek Johnson, Brooke L. Fridley, Paul A. Decker, Yuanyuan Xiao, Thomas M. Kollmeyer, Amanda L. Rynearson, Stephanie Fink, Terri Rice, Lucie S. McCoy, Chandrale

Journal:

Cancer Genetics

Year:

2011

Language:

english

File:

PDF, 199 KB

english, 2011

22

Progesterone receptor gene polymorphisms and risk of endometriosis: results from an international collaborative effort

Aimee M. Near, Anna H. Wu, Claire Templeman, David J. Van Den Berg, Jennifer A. Doherty, Mary Anne Rossing, Ellen L. Goode, Julie M. Cunningham, Robert A. Vierkant, Brooke L. Fridley, Georgia Chenevix

Journal:

Fertility and Sterility

Year:

2011

Language:

english

File:

PDF, 137 KB

english, 2011

23

Mycophenolic acid response biomarkers: A cell line model system-based genome-wide screen

Tse-Yu Wu, Brooke L. Fridley, Gregory D. Jenkins, Anthony Batzler, Liewei Wang, Richard M. Weinshilboum

Journal:

International Immunopharmacology

Year:

2011

Language:

english

File:

PDF, 1014 KB

english, 2011

24

Betaine-homocysteine methyltransferase: Human liver genotype–phenotype correlation

Qiping Feng, Krishna Kalari, Brooke L. Fridley, Gregory Jenkins, Yuan Ji, Ryan Abo, Scott Hebbring, Jianping Zhang, Monica D. Nye, J. Steven Leeder, Richard M. Weinshilboum

Journal:

Molecular Genetics and Metabolism

Year:

2011

Language:

english

File:

PDF, 1.11 MB

english, 2011

25

ABO blood group and risk of epithelial ovarian cancer within the Ovarian Cancer Association Consortium

Elizabeth M. Poole, Margaret A. Gates, Brigit A. High, Stephen J. Chanock, Daniel W. Cramer, Julie M. Cunningham, Brooke L. Fridley, Simon A. Gayther, Ellen L. Goode, Edwin S. Iversen, Jolanta Lissows

Journal:

Cancer Causes & Control

Year:

2012

Language:

english

File:

PDF, 189 KB

english, 2012

26

179 Clinical Characteristics of Familial Irritable Bowel Syndrome (IBS) Differ from Sporadic IBS

Yuri A. Saito, Janice Zimmerman, Ann E. Almazar Elder, Joseph J. Larson, Elizabeth J. Atkinson, Brooke L. Fridley, Mariza de Andrade, G. Richard Locke, Gloria M. Petersen, Nicholas J. Talley

Journal:

Gastroenterology

Year:

2008

Language:

english

File:

PDF, 108 KB

english, 2008

27

1002 The Role of 5-HTT LPR and Gnβ3 825c>T Polymorphisms and Gene-Environment Interactions in Irritable Bowel Syndrome (IBS)

Yuri A. Saito, Joseph J. Larson, Elizabeth J. Atkinson, Brooke L. Fridley, Janice Zimmerman, Ann E. Almazar Elder, Gloria M. Petersen, Nicholas J. Talley

Journal:

Gastroenterology

Year:

2009

Language:

english

File:

PDF, 167 KB

english, 2009

28

Primary Biliary Cirrhosis Is Associated With a Genetic Variant in the 3′ Flanking Region of the CTLA4 Gene

Brian D. Juran, Elizabeth J. Atkinson, Erik M. Schlicht, Brooke L. Fridley, Konstantinos N. Lazaridis

Journal:

Gastroenterology

Year:

2008

Language:

english

File:

PDF, 156 KB

english, 2008

29

Genetic association with overall survival of taxane-treated lung cancer patients - a genome-wide association study in human lymphoblastoid cell lines followed by a clinical association study

Nifang Niu, Daniel J Schaid, Ryan P Abo, Krishna Kalari, Brooke L Fridley…

Journal:

Year:

2012

Language:

english

File:

PDF, 710 KB

english, 2012

30

Discovery of genetic biomarkers contributing to variation in drug response of cytidine analogues using human lymphoblastoid cell lines

Li, Liang, Fridley, Brooke L, Kalari, Krishna, Niu, Nifang, Jenkins, Gregory, Batzler, Anthony, Abo, Ryan P, Schaid, Daniel, Wang, Liewei

Journal:

Year:

2014

Language:

english

File:

PDF, 1.98 MB

english, 2014

31

Integrative genomic analysis identifies epigenetic marks that mediate genetic risk for epithelial ovarian cancer

Koestler, Devin C, Chalise, Prabhakar, Cicek, Mine S, Cunningham, Julie M, Armasu, Sebastian, Larson, Melissa C, Chien, Jeremy, Block, Matthew, Kalli, Kimberly R, Sellers, Thomas A, Fridley, Brooke L,

Journal:

BMC Medical Genomics

Year:

2014

Language:

english

File:

PDF, 614 KB

english, 2014

32

GWAS meta-analysis and replication identifies three new susceptibility loci for ovarian cancer

Pharoah, Paul D P, Tsai, Ya-Yu, Ramus, Susan J, Phelan, Catherine M, Goode, Ellen L, Lawrenson, Kate, Buckley, Melissa, Fridley, Brooke L, Tyrer, Jonathan P, Shen, Howard, Weber, Rachel, Karevan, Rod,

Journal:

Nature Genetics

Year:

2013

Language:

english

File:

PDF, 1.18 MB

english, 2013

33

Acquired chromosomal anomalies in chronic lymphocytic leukemia patients compared with more than 50,000 quasi-normal participants

Laurie, Cathy C., Laurie, Cecelia A., Smoley, Stephanie A., Carlson, Erin E., Flinn, Ian, Fridley, Brooke L., Greisman, Harvey A., Gribben, John G., Jelinek, Diane F., Nelson, Sarah C., Paietta, Elisa

Journal:

Cancer Genetics

Year:

2014

Language:

english

File:

PDF, 1.92 MB

english, 2014

34

M2057 Inflammatory-Related Gene Variants as Risk Factors for Pancreatic Cancer: Does NOS Play a Role?

Lombardo, Kaye Reid, Fridley, Brooke L., Cunningham, Julie M., Sarr, Michael G., Petersen, Gloria M.

Journal:

Gastroenterology

Year:

2010

Language:

english

File:

PDF, 78 KB

english, 2010

35

Participation Bias and Its Impact on the Assembly of a Genetic Specimen Repository for a Myocardial Infarction Cohort

Arruda-Olson, Adelaide M., Weston, Susan A., Fridley, Brooke L., Killian, Jill M., Koepsell, Ellen E., Roger, Véronique L.

Journal:

Mayo Clinic Proceedings

Year:

2007

Language:

english

File:

PDF, 63 KB

english, 2007

36

Association of TNFSF8 Polymorphisms With Peripheral Neutrophil Count

Cunningham, Julie M., Gabriel, Sherine E., Bielinski, Suzette J., Arrtjda-Olson, Adelaide M., Roger, Véronique L., Chai, High S., de Andrade, Mariza, Fridley, Brooke L.

Journal:

Mayo Clinic Proceedings

Year:

2011

Language:

english

File:

PDF, 288 KB

english, 2011

37

Methylation of leukocyte DNA and ovarian cancer: relationships with disease status and outcome

Fridley, Brooke L, Armasu, Sebastian M, Cicek, Mine S, Larson, Melissa C, Wang, Chen, Winham, Stacey J, Kalli, Kimberly R, Koestler, Devin C, Rider, David N, Shridhar, Viji, Olson, Janet E, Cunningham

Journal:

BMC Medical Genomics

Year:

2014

Language:

english

File:

PDF, 1.04 MB

english, 2014

38

Integrative Gene Set Analysis: Application to Platinum Pharmacogenomics

Fridley, Brooke L., Abo, Ryan, Tan, Xiang-Lin, Jenkins, Gregory D., Batzler, Anthony, Moyer, Ann M., Biernacka, Joanna M., Wang, Liewei

Journal:

Omics A Journal of Integrative Biology

Year:

2014

Language:

english

File:

PDF, 214 KB

english, 2014

39

Simultaneous Analysis of Multiple Data Types in Pharmacogenomic Studies Using Weighted Sparse Canonical Correlation Analysis

Chalise, Prabhakar, Batzler, Anthony, Abo, Ryan, Wang, Liewei, Fridley, Brooke L.

Journal:

Omics A Journal of Integrative Biology

Year:

2012

Language:

english

File:

PDF, 357 KB

english, 2012

40

Genome-Wide Investigation of Regional Blood-Based DNA Methylation Adjusted for Complete Blood Counts Implicates BNC2 in Ovarian Cancer

Winham, Stacey J., Armasu, Sebastian M., Cicek, Mine S., Larson, Melissa C., Cunningham, Julie M., Kalli, Kimberly R., Fridley, Brooke L., Goode, Ellen L.

Journal:

Genetic Epidemiology

Year:

2014

Language:

english

File:

PDF, 563 KB

english, 2014

41

Methods for analysis in pharmacogenomics: lessons from the Pharmacogenetics Research Network Analysis Group

Srinivasan, Balaji S, Chen, Jinbo, Cheng, Cheng, Conti, David, Duan, Shiwei, Fridley, Brooke L, Gu, Xiangjun, Haines, Jonathan L, Jorgenson, Eric, Kraja, Aldi, Lasky-Su, Jessica, Li, Lang, Rodin, Andr

Journal:

Pharmacogenomics

Year:

2009

Language:

english

File:

PDF, 426 KB

english, 2009

42

Familial Aggregation of Irritable Bowel Syndrome: A Family Case–Control Study

Saito, Yuri A, Petersen, Gloria M, Larson, Joseph J, Atkinson, Elizabeth J, Fridley, Brooke L, de Andrade, Mariza, Locke, G Richard, Zimmerman, Janice M, Almazar-Elder, Ann E, Talley, Nicholas J

Journal:

American Journal of Gastroenterology

Year:

2010

Language:

english

File:

PDF, 217 KB

english, 2010

43

Use of the gamma method for self-contained gene-set analysis of SNP data

Biernacka, Joanna M, Jenkins, Gregory D, Wang, Liewei, Moyer, Ann M, Fridley, Brooke L

Journal:

European Journal of Human Genetics

Year:

2012

Language:

english

File:

PDF, 379 KB

english, 2012

44

Epigenetic analysis leads to identification of HNF1B as a subtype-specific susceptibility gene for ovarian cancer

Shen, Hui, Fridley, Brooke L., Song, Honglin, Lawrenson, Kate, Cunningham, Julie M., Ramus, Susan J., Cicek, Mine S., Tyrer, Jonathan, Stram, Douglas, Larson, Melissa C., Köbel, Martin, Ziogas, Argyri

Journal:

Nature Communications

Year:

2013

Language:

english

File:

PDF, 1.13 MB

english, 2013

45

Thiopurine pharmacogenomics: association of SNPs with clinical response and functional validation of candidate genes

Matimba, Alice, Li, Fang, Livshits, Alina, Cartwright, Cher S, Scully, Stephen, Fridley, Brooke L, Jenkins, Gregory, Batzler, Anthony, Wang, Liewei, Weinshilboum, Richard, Lennard, Lynne

Journal:

Pharmacogenomics

Year:

2014

Language:

english

File:

PDF, 1.79 MB

english, 2014

46

TSPYL5 SNPs: Association with Plasma Estradiol Concentrations and Aromatase Expression

Liu, Mohan, Ingle, James N., Fridley, Brooke L., Buzdar, Aman U., Robson, Mark E., Kubo, Michiaki, Wang, Liewei, Batzler, Anthony, Jenkins, Gregory D., Pietrzak, Tracy L., Carlson, Erin E., Goetz, Mat

Journal:

Molecular Endocrinology

Year:

2013

Language:

english

File:

PDF, 2.39 MB

english, 2013

47

Books Received

Liu, Mohan, Ingle, James N., Fridley, Brooke L., Buzdar, Aman U., Robson, Mark E., Kubo, Michiaki, Wang, Liewei, Batzler, Anthony, Jenkins, Gregory D., Pietrzak, Tracy L., Carlson, Erin E., Goetz, Mat

Journal:

Year:

1972

Language:

english

File:

PDF, 634 KB

english, 1972

48

Bayesian genomic models for the incorporation of pathway topology knowledge into association studies

Brisbin, Abra, Fridley, Brooke L.

Journal:

Statistical Applications in Genetics and Molecular Biology

Year:

2013

Language:

english

File:

PDF, 1.53 MB

english, 2013

49

Variation at 8q24 and 9p24 and Risk of Epithelial Ovarian Cancer

White, Kristin L., Sellers, Thomas A., Fridley, Brooke L., Vierkant, Robert A., Phelan, Catherine M., Tsai, Ya-Yu, Kalli, Kimberly R., Berchuck, Andrew, Iversen, Edwin S., Hartmann, Lynn C., Liebow, M

Journal:

Twin Research and Human Genetics

Year:

2010

Language:

english

File:

PDF, 421 KB

english, 2010

50

Assessment of genotype imputation methods

Biernacka, Joanna M, Tang, Rui, Li, Jia, McDonnell, Shannon K, Rabe, Kari G, Sinnwell, Jason P, Rider, David N, de Andrade, Mariza, Goode, Ellen L, Fridley, Brooke L

Journal:

BMC Proceedings

Year:

2009

Language:

english

File:

PDF, 293 KB

english, 2009